CIRRUCULUM VITAE

RESEARCH INTERESTS

·         Biomedical Data Mining

·         Text Mining

·         Machine Learning

·         Expert Systems

·         Association Rule Mining

·         Classification

·         Clustering

·         Missing Data

·         Feature Selection

COURSES

·         MAT265 Probability and Statistics

·         BIL391 Database management systems

·         BIL394 Data mining

·         BIL478 Medical Informatics

·         CENG103 Introduction to computer engineering

·         CMPE151 Introduction to computers

·         CMPE152 Computer Programming

·         BIL396 Artificial Intelligence

PUBLICATIONS

 

JOURNALS OF SCIENCE CITATION INDEX(SCI)  EXPANDED

 

1.    P. Yıldırım, Ç. Çeken, R. Hassanpour, M. R. Tolun, Prediction of Similarities among Rheumatic Diseases, Journal of Medical Systems 36(3): 2012, Page: 1485-1490 .

  1. P. Yıldırım, K.Çeken, O.Saka, Knowledge discovery for the treatment of bacteria affecting liver, Turkish Journal of Medical Sciences, 2011; 41 (5): Page:867-875.
  2. P. Yıldırım, Ç. Çeken, R. Hassanpour, S. Esmelioğlu, M. R. Tolun, Mining MEDLINE for the treatment  of osteoporosis, Journal of Medical Systems, Volume 36, Issue 4(2012), Page:2339-2347.
  3. P.Yıldırım, Ljiljana Majnaric, Ozgur Ilyas Ekmekci, Andreas Holzinger, Knowledge discovery of drug data on the example of adverse reaction prediction, BMC Bioinformatics 2014, 15(Suppl 6), S7, Pages:1-11

 

 

BOOK CHAPTERS

1.    Andreas HOLZINGER, Pinar YILDIRIM, Michael GEIER, Klaus-Martin SIMONIC, Quality-based knowledge discovery from medical text on the Web, Quality issues in the management of web information, Springer Berlin Heidelberg, 145-158, 2012.

2.    Pinar Yildirim, Marcus Bloice, and Andreas Holzinger, Knowledge Discovery and Visualization of Clusters for Erythromycin Related Adverse Events in the FDA Drug Adverse Event Reporting System, Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, State-of-the-Art and Future Challenges, LNCS 8401, pp. 101–116, 2014 Springer-Verlag Berlin Heidelberg.

 

 

INTERNATIONAL CONFERENCE PAPERS

 

1.    P. Yıldırım, A. Bakır, Interoperability between various IT Systems in Hacettepe University Hospitals in Turkey, International HL7 Interoperability Conference IHIC 2006, Cologne Germany, 24-25 August 2006 Available at http://ihic.hl7.de/proceedings.html.

2.    P. Yıldırım, A. Bakır, S. Birinci, Web Based  Teleradiology  in Hacettepe University Hospitals in Turkey, In Proceedings of 12th International Symposium for Health Information Management Research, Sheffield, UK,18-20 July 2007, Page 109-118.

3.    P. Yıldırım, M. R. Tolun, Induction for Radiology Patients, e-health 08, City University, London, UK, 8-9 September 2008, Lecture Notes of the Institute for Computer Sciences, Social  Informatics and Telecommunications Engineering, Vol 0001, ISSN  1867-8211, Springer Berlin Heidelberg, Page 208-220.

4.    P. Yıldırım, A. J. J. Yepes, O. Saka, D.  Rebholz Schuhmann, Knowledge discovery in biomedical texts, Biyomedikal Metinlerde Bilgi Keşfi, TURKMIA’ 09 Proceedings, Antalya, Turkey, VI. Ulusal Tıp Bilişimi Kongresi Bildirileri, ENMI (European Notes in Medical Informatics) Vol V, No 1, 2009, ISSN 1861-3179, Page 323.

5.    P. Yıldırım, Ç. Çeken, O. Saka, Disease drug relationships for vasculitis diseases, 5th International Symposium on Health Informatics and Bioinformatics, HIBIT’10, April 20-22, 2010, Antalya, Turkey ( IEEE Xplore) Page 218.

6.    P. Yıldırım, Ç. Çeken, K. Çeken, M. R. Tolun, Cluster analysis for vasculitis diseases, Second International Conference Networked Digital Technologies 2010, Prague, Czech Republic, July 7-9, 2010, Part II, Communications in Computer and Information Science (CCIS) Series of Springer LNCS, 88, Page 36-45, Springer-Verlag Berlin Heidelberg.

7.    P.Yıldırım, K. Çeken, O. Saka, Discovering similarities fort he treatments of liver specific parasites, FedCSIS 2011,Szczecin, Poland, 18-21 September 2011, Proceedings of the Federated Conference on Computer Science and Information Systems, ISBN 978-83-60810-22-4, Page 165-168 (IEEE Xplore).

8.    P. Yıldırım, Ç. Çeken, Literature Mining for the Diagnostic Procedures of Osteoporosis, USAB2011 Information Quality in eHealth, 25-26 Nov 2011, Graz, Austria, Lecture Notes in Computer Science(LNCS) 7058 Page 43-51, 2011, Springer-Verlag Berlin Heidelberg.

9.    A. Holzinger,K-M. Simonic, P. Yıldırım, Disease-disease relationships for rheumatic diseases, Compsac2012, IEEE 36th International Conference on Computer Software and Applications, 16-20 July 2012, Izmir, Turkey, indexed through INSPEC and EI Index and  IEEE digital library.

10. P.Yildirim, O.I.Ekmekci, A.Holzinger, On Knowledge Discovery in Open Medical Data on the Example of the FDA Drug Adverse Event Reporting System for Alendronate (Fosamax), SouthCHI’ 13, Maribor, Sloveina, Lecture Notes in Computer Science(LNCS) 7947 Page 195-206, 1-3 July 2013, Springer Verlag Berlin Heidelberg.

11. P.Yildirim, L.Majnarić. O.I.Ekmekci, A.Holzinger, On the Prediction of Clusters for Adverse Reactions and Allergies on Antibiotics for Children to improve Biomedical Decision Making, CD-ARES 2013, University of  Regensburg, Germany, Lecture Notes in Computer Science( LNCS) 8127, Page. 431–445, 2-6 September, Springer Verlag Berlin Heidelberg.

 

 

 

NATIONAL CONFERENCE PAPERS

 

1.    O. K. Başkurt, N. Zayim, P. Yıldırım, O. Saka, Interactive Medical Education System, ACIME (Academic Computing in Macintosh Environment), Akdeniz University, Antalya,Turkey 1995, Page 13-19.

2.    P. Yıldırım, U. Arıöz, Analysis of Picture Archiving and Communications System, Medical Informatics 2005, Antalya, Turkey 17–20 Nov 2005, Page 153–159.

3.    U. Arıöz, P. Yıldırım, B. Kaymakoğlu, A. Erdem, Clinical Document Architecture (CDA), Medical Informatics 2005, Antalya, Turkey 17–20 Nov 2005, Page 163.

4.    K. H. Gülkesen, A. Erdem, B. Kaymakoğlu, U. Arıöz, P. Yıldırım, O. Saka, Typographics Errors Variants in Pathology Reports, Medical Informatics 2005, Antalya, Turkey 17-20 Nov 2005, Page 145-152.

5.    P. Yıldırım, S. M. Öztaner, K. H. Gülkesen, Survey on Radiologists’ View of PACS, Medical Informatics 2006, Antalya, Turkey 16-19 Nov 2006, Page 24-28.

6.    P. Yıldırım, A. Bakır, Interoperability of IT Systems in Hacettepe University Hospitals, Medical Informatics 2006, Antalya, Turkey, 16-19 Nov 2006, Page 103-109.

7.    P. Yıldırım, A. Bakır, S. Birinci, Teleradiology Application in Hacettepe University      Hospitals, Medical Informatics 2007, Antalya, Turkey 15-18 Nov 2007, Page 24-29.

8.    P. Yıldırım, M. Uludağ, A. Görür, Data Mining in Hospital Information Systems, Akademik Bilişim 2008, Çanakkale, Turkey, Çanakkale Onsekiz Mart University 30 January-01 February 2008, Page 106.

9.    P. Yıldırım, M. Uludağ, A. Görür, Data Mining in Hospital Information Systems, Hastane ve Yasam Dergisi(Akademik ve Aktüel Tıp Dergisi) March 2008, No 31, ISSN 1305-516X, Page 96-100.

  1. P. Yıldırım, Ü. E. Mumcuoğlu, M. R. Tolun, M. N. Özmen, M. Uludağ, Multi-Relational Data Mining Approach for Effective Data Mining in Clinical Databases, Medical Informatics 2008 , Antalya, Turkey 13-16 Nov 2008, Page 59-67.

11. P. Yıldırım, M. R. Tolun, Biomedical text mining, 3. Mühendislik ve Teknoloji Sempozyumu, 29-30 Nisan 2010, Çankaya Üniversitesi, Ankara. Page 150-155.

12. P.Yıldırım, A. Holzinger, Data visualization in healthcare, Medical Informatics, Turkmia 2012, 15-17 Nov 2012, Antalya, Turkey, Page 105.

13. M.Keskin, P. Yıldırım, Spor ve Yaşam Merkezlerinde Veri Madenciliği Çalışması, 15. Uluslar arası Katılımlı Ulusal Biyoistatistik Kongresi, Adnan Menderes Üniversitesi, Aydın, 20-23 Ağustos 2013, Bildiri Özetleri Kitabı, Sayfa 46.

14. E.Tahminciler, P. Yıldırım, Erythromycin İlacının Yan Etkilerinin Araştırılması için Web’deki Hasta Yorumlarının Analizi, 15. Uluslar arası Katılımlı Ulusal Biyoistatistik Kongresi, Adnan Menderes Üniversitesi, Aydın, 20-23 Ağustos 2013, Bildiri Özetleri Kitabı, Sayfa 59.